IL_4V8E_254

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

4V8E|1|CA|G|1747

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8E_254 not in the Motif Atlas

Homologous match to IL_5J7L_308

Geometric discrepancy: 0.112

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4V8E|1|CA|C|1734
4V8E|1|CA|G|1735
4V8E|1|CA|U|1736
4V8E|1|CA|A|1737
4V8E|1|CA|A|1738
4V8E|1|CA|C|1739
*
4V8E|1|CA|G|1744
4V8E|1|CA|G|1745
4V8E|1|CA|A|1746
4V8E|1|CA|G|1747
4V8E|1|CA|A|1748
4V8E|1|CA|A|1749
4V8E|1|CA|G|1750

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain CD

50S ribosomal protein L2

Chain DA

Small subunit ribosomal RNA; SSU rRNA