IL_4V8E_256

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

4V8E|1|CA|G|1833, 4V8E|1|CA|G|1848, 4V8E|1|CA|U|1852

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8E_256 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.088

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

4V8E|1|CA|U|1830
4V8E|1|CA|G|1831
4V8E|1|CA|C|1832
4V8E|1|CA|G|1833
4V8E|1|CA|A|1834
4V8E|1|CA|A|1835
4V8E|1|CA|C|1836
*
4V8E|1|CA|G|1845
4V8E|1|CA|G|1846
4V8E|1|CA|A|1847
4V8E|1|CA|G|1848
4V8E|1|CA|G|1849
4V8E|1|CA|U|1850
4V8E|1|CA|A|1851
4V8E|1|CA|U|1852
4V8E|1|CA|A|1853

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain CD

50S ribosomal protein L2

Chain DA

Small subunit ribosomal RNA; SSU rRNA