IL_4V8E_272

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

4V8E|1|CA|G|2135, 4V8E|1|CA|U|2136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8E_272 not in the Motif Atlas

Geometric match to IL_1KXK_003

Geometric discrepancy: 0.2514

The information below is about IL_1KXK_003

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

4V8E|1|CA|G|2133
4V8E|1|CA|C|2134
4V8E|1|CA|G|2135
4V8E|1|CA|U|2136
4V8E|1|CA|A|2137
4V8E|1|CA|G|2138
4V8E|1|CA|G|2139
4V8E|1|CA|A|2140
4V8E|1|CA|U|2141
4V8E|1|CA|A|2142
4V8E|1|CA|G|2143
*
4V8E|1|CA|C|2201
4V8E|1|CA|C|2202

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain BA

Small subunit ribosomal RNA; SSU rRNA

Chain DD

TRNA-TYR