IL_4V8E_273

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGGAG*CGCCGGUGAAAUACC

Length

20 nucleotides

Bulged bases

4V8E|1|CA|G|2189, 4V8E|1|CA|U|2190

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8E|1|CA|G|2146
4V8E|1|CA|G|2147
4V8E|1|CA|G|2148
4V8E|1|CA|A|2149
4V8E|1|CA|G|2150
*
4V8E|1|CA|C|2184
4V8E|1|CA|G|2185
4V8E|1|CA|C|2186
4V8E|1|CA|C|2187
4V8E|1|CA|G|2188
4V8E|1|CA|G|2189
4V8E|1|CA|U|2190
4V8E|1|CA|G|2191
4V8E|1|CA|A|2192
4V8E|1|CA|A|2193
4V8E|1|CA|A|2194
4V8E|1|CA|U|2195
4V8E|1|CA|A|2196
4V8E|1|CA|C|2197
4V8E|1|CA|C|2198

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain BA

Small subunit ribosomal RNA; SSU rRNA

Chain DD

TRNA-TYR