IL_4V8E_276

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAG*CGGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8E_276 not in the Motif Atlas

Homologous match to IL_4WF9_086

Geometric discrepancy: 0.3572

The information below is about IL_4WF9_086

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_61476.2

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

7

Unit IDs

4V8E|1|CA|C|2310
4V8E|1|CA|A|2311
4V8E|1|CA|G|2312
*
4V8E|1|CA|C|2330
4V8E|1|CA|G|2331
4V8E|1|CA|G|2332
4V8E|1|CA|A|2333
4V8E|1|CA|G|2334

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain C3

50S ribosomal protein L27

Chain CB

5S ribosomal RNA; 5S rRNA

Chain CG

50S ribosomal protein L5

Chain CQ

50S ribosomal protein L18