IL_4V8E_282

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8E_282 not in the Motif Atlas

Homologous match to IL_7RQB_094

Geometric discrepancy: 0.1771

The information below is about IL_7RQB_094

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform; mini C-loop

Motif group

IL_92788.2

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

14

Unit IDs

4V8E|1|CA|A|2472
4V8E|1|CA|U|2473
4V8E|1|CA|C|2474
*
4V8E|1|CA|G|2502
4V8E|1|CA|G|2503
4V8E|1|CA|U|2504
4V8E|1|CA|U|2505
4V8E|1|CA|U|2506

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain CP

50S ribosomal protein L16

Chain DB

TRNA-TYR