IL_4V8E_288

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

4V8E|1|CA|A|2615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8E_288 not in the Motif Atlas

Homologous match to IL_5J7L_344

Geometric discrepancy: 0.3561

The information below is about IL_5J7L_344

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

4V8E|1|CA|C|2604
4V8E|1|CA|G|2605
*
4V8E|1|CA|C|2614
4V8E|1|CA|A|2615
4V8E|1|CA|G|2616

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain CD

50S ribosomal protein L2

Chain DB

TRNA-TYR

Chain DC

Transfer RNA; tRNA