IL_4V8E_295

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

4V8E|1|CA|A|2779

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8E_295 not in the Motif Atlas

Homologous match to IL_7RQB_107

Geometric discrepancy: 0.0844

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V8E|1|CA|G|2751
4V8E|1|CA|A|2752
4V8E|1|CA|U|2753
4V8E|1|CA|A|2754
4V8E|1|CA|A|2755
4V8E|1|CA|C|2756
*
4V8E|1|CA|G|2776
4V8E|1|CA|G|2777
4V8E|1|CA|A|2778
4V8E|1|CA|A|2779
4V8E|1|CA|G|2780
4V8E|1|CA|C|2781

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain CH

50S ribosomal protein L6

Chain CM

50S ribosomal protein L13