IL_4V8E_333

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GA*UGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8E_333 not in the Motif Atlas

Homologous match to IL_5J7L_031

Geometric discrepancy: 0.1424

The information below is about IL_5J7L_031

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

4V8E|1|DA|G|654
4V8E|1|DA|A|655
*
4V8E|1|DA|U|751
4V8E|1|DA|G|752
4V8E|1|DA|A|753
4V8E|1|DA|C|754

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain DK

30S RIBOSOMAL PROTEIN S8

Chain DR

30S RIBOSOMAL PROTEIN S15