IL_4V8E_388

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

4V8E|1|CA|U|2155

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8E_388 not in the Motif Atlas

Homologous match to IL_5J7L_330

Geometric discrepancy: 0.5018

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

4V8E|1|CA|C|2152
4V8E|1|CA|U|2153
4V8E|1|CA|G|2154
4V8E|1|CA|U|2155
4V8E|1|CA|G|2156
4V8E|1|CA|A|2157
4V8E|1|CA|A|2158
4V8E|1|CA|C|2159
*
4V8E|1|CA|G|2178
4V8E|1|CA|G|2179
4V8E|1|CA|G|2180
4V8E|1|CA|A|2181
4V8E|1|CA|G|2182

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain BA

Small subunit ribosomal RNA; SSU rRNA