IL_4V8E_398

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCUAGGG*UACCAAAC

Length

15 nucleotides

Bulged bases

4V8E|1|CA|U|925, 4V8E|1|CA|A|943

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8E|1|CA|G|923
4V8E|1|CA|C|924
4V8E|1|CA|U|925
4V8E|1|CA|A|926
4V8E|1|CA|G|927
4V8E|1|CA|G|928
4V8E|1|CA|G|929
*
4V8E|1|CA|U|942
4V8E|1|CA|A|943
4V8E|1|CA|C|944
4V8E|1|CA|C|945
4V8E|1|CA|A|946
4V8E|1|CA|A|947
4V8E|1|CA|A|948
4V8E|1|CA|C|949

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain CP

50S ribosomal protein L16

Chain CV

50S ribosomal protein L25

Chain DB

TRNA-TYR