IL_4V8E_399

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UG*CAACAAG

Length

9 nucleotides

Bulged bases

4V8E|1|CA|C|1556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8E_399 not in the Motif Atlas

Homologous match to IL_9DFE_060

Geometric discrepancy: 0.5823

The information below is about IL_9DFE_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_46086.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

1

Unit IDs

4V8E|1|CA|U|1529
4V8E|1|CA|G|1530
*
4V8E|1|CA|C|1553
4V8E|1|CA|A|1554
4V8E|1|CA|A|1555
4V8E|1|CA|C|1556
4V8E|1|CA|A|1557
4V8E|1|CA|A|1558
4V8E|1|CA|G|1559

Current chains

Chain CA

RNA (2912-MER)

Nearby chains