IL_4V8F_012

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAAU*AUAG

Length

9 nucleotides

Bulged bases

4V8F|1|AA|A|283

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8F_012 not in the Motif Atlas

Homologous match to IL_7RQB_011

Geometric discrepancy: 0.1872

The information below is about IL_7RQB_011

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4V8F|1|AA|C|280
4V8F|1|AA|G|281
4V8F|1|AA|A|282
4V8F|1|AA|A|283
4V8F|1|AA|U|284
*
4V8F|1|AA|A|357
4V8F|1|AA|U|358
4V8F|1|AA|A|359
4V8F|1|AA|G|360

Current chains

Chain AA

RNA (2912-MER)

Nearby chains