IL_4V8F_017

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UUAAG*CGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8F_017 not in the Motif Atlas

Homologous match to IL_4WF9_019

Geometric discrepancy: 0.1008

The information below is about IL_4WF9_019

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_66798.2

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V8F|1|AA|U|606
4V8F|1|AA|U|607
4V8F|1|AA|A|608
4V8F|1|AA|A|609
4V8F|1|AA|G|609|||A
*
4V8F|1|AA|C|618|||A
4V8F|1|AA|G|619
4V8F|1|AA|G|620
4V8F|1|AA|A|621
4V8F|1|AA|G|622

Current chains

Chain AA

RNA (2912-MER)

Nearby chains

Chain AF

50S ribosomal protein L4

Chain AO

50S ribosomal protein L15