3D structure

PDB id
4V8F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
CUAAG*CGAAG
Length
10 nucleotides
Bulged bases
4V8F|1|AA|A|1156
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V8F_035 not in the Motif Atlas
Homologous match to IL_7RQB_036
Geometric discrepancy: 0.0951
The information below is about IL_7RQB_036
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_89002.2
Basepair signature
cWW-tWH-L-tHS-cWW
Number of instances in this motif group
20

Unit IDs

4V8F|1|AA|C|998
4V8F|1|AA|U|999
4V8F|1|AA|A|1000
4V8F|1|AA|A|1001
4V8F|1|AA|G|1002
*
4V8F|1|AA|C|1153
4V8F|1|AA|G|1154
4V8F|1|AA|A|1155
4V8F|1|AA|A|1156
4V8F|1|AA|G|1157

Current chains

Chain AA
RNA (2912-MER)

Nearby chains

Chain A1
50S ribosomal protein L20
Chain A2
50S ribosomal protein L21
Chain AB
5S ribosomal RNA; 5S rRNA
Chain AX
50S ribosomal protein L30

Coloring options:


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