IL_4V8F_063

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

4V8F|1|AA|C|1544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8F_063 not in the Motif Atlas

Homologous match to IL_7RQB_063

Geometric discrepancy: 0.1913

The information below is about IL_7RQB_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02656.1

Basepair signature

cWW-L-R-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

4V8F|1|AA|G|1526
4V8F|1|AA|G|1527
4V8F|1|AA|A|1528
4V8F|1|AA|A|1529
4V8F|1|AA|G|1530
*
4V8F|1|AA|U|1541
4V8F|1|AA|G|1542
4V8F|1|AA|A|1543
4V8F|1|AA|C|1544
4V8F|1|AA|A|1545
4V8F|1|AA|A|1545|||A
4V8F|1|AA|C|1546

Current chains

Chain AA

RNA (2912-MER)

Nearby chains