3D structure

PDB id
4V8F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
UCAAG*CGAAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V8F_074 not in the Motif Atlas
Homologous match to IL_7RQB_074
Geometric discrepancy: 0.1607
The information below is about IL_7RQB_074
Detailed Annotation
UAA/GAN with extra pair
Broad Annotation
No text annotation
Motif group
IL_90318.1
Basepair signature
cWW-tSH-L-R-L-R-cWW
Number of instances in this motif group
3

Unit IDs

4V8F|1|AA|U|1851
4V8F|1|AA|C|1852
4V8F|1|AA|A|1853
4V8F|1|AA|A|1854
4V8F|1|AA|G|1855
*
4V8F|1|AA|C|1887
4V8F|1|AA|G|1888
4V8F|1|AA|A|1889
4V8F|1|AA|A|1890
4V8F|1|AA|G|1891

Current chains

Chain AA
RNA (2912-MER)

Nearby chains

Chain AD
50S ribosomal protein L2
Chain BD
TRNA-TYR

Coloring options:


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