IL_4V8F_102

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

4V8F|1|AA|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8F_102 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.081

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

4V8F|1|AA|U|2636
4V8F|1|AA|U|2637
4V8F|1|AA|G|2638
4V8F|1|AA|A|2639
4V8F|1|AA|G|2640
*
4V8F|1|AA|C|2774
4V8F|1|AA|A|2775
4V8F|1|AA|A|2776
4V8F|1|AA|G|2777
4V8F|1|AA|A|2778
4V8F|1|AA|U|2779
4V8F|1|AA|G|2780
4V8F|1|AA|A|2781
4V8F|1|AA|G|2782

Current chains

Chain AA

RNA (2912-MER)

Nearby chains

Chain AE

50S ribosomal protein L3

Chain AM

50S ribosomal protein L13