IL_4V8F_105

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UUUCC*GGUAG

Length

10 nucleotides

Bulged bases

4V8F|1|AA|U|2689, 4V8F|1|AA|C|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8F_105 not in the Motif Atlas

Homologous match to IL_7RQB_105

Geometric discrepancy: 0.0842

The information below is about IL_7RQB_105

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_08296.3

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

4V8F|1|AA|U|2687
4V8F|1|AA|U|2688
4V8F|1|AA|U|2689
4V8F|1|AA|C|2690
4V8F|1|AA|C|2691
*
4V8F|1|AA|G|2718
4V8F|1|AA|G|2719
4V8F|1|AA|U|2720
4V8F|1|AA|A|2721
4V8F|1|AA|G|2722

Current chains

Chain AA

RNA (2912-MER)

Nearby chains

Chain A0

50S ribosomal protein L17

Chain AE

50S ribosomal protein L3

Chain AR

50S ribosomal protein L19