IL_4V8F_107

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

4V8F|1|AA|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8F_107 not in the Motif Atlas

Homologous match to IL_5J7L_350

Geometric discrepancy: 0.1521

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V8F|1|AA|G|2737
4V8F|1|AA|A|2738
4V8F|1|AA|U|2739
4V8F|1|AA|A|2740
4V8F|1|AA|A|2741
4V8F|1|AA|C|2742
*
4V8F|1|AA|G|2762
4V8F|1|AA|G|2763
4V8F|1|AA|A|2764
4V8F|1|AA|A|2765
4V8F|1|AA|G|2766
4V8F|1|AA|C|2767

Current chains

Chain AA

RNA (2912-MER)

Nearby chains

Chain AH

50S ribosomal protein L6

Chain AM

50S ribosomal protein L13