IL_4V8F_124

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGAC*GG

Length

6 nucleotides

Bulged bases

4V8F|1|BA|G|129|||A, 4V8F|1|BA|A|130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8F_124 not in the Motif Atlas

Homologous match to IL_6CZR_119

Geometric discrepancy: 0.1732

The information below is about IL_6CZR_119

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_33761.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

4V8F|1|BA|U|129
4V8F|1|BA|G|129|||A
4V8F|1|BA|A|130
4V8F|1|BA|C|131
*
4V8F|1|BA|G|231
4V8F|1|BA|G|232

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BS

30S RIBOSOMAL PROTEIN S16

Chain BT

30S RIBOSOMAL PROTEIN S17

Chain BW

30S RIBOSOMAL PROTEIN S20