IL_4V8F_138

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGGCCAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8F_138 not in the Motif Atlas

Homologous match to IL_4LFB_020

Geometric discrepancy: 0.0881

The information below is about IL_4LFB_020

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

4V8F|1|BA|C|504
4V8F|1|BA|G|505
4V8F|1|BA|G|506
4V8F|1|BA|C|507
4V8F|1|BA|C|508
4V8F|1|BA|A|509
4V8F|1|BA|A|510
4V8F|1|BA|C|511
*
4V8F|1|BA|G|540
4V8F|1|BA|G|541

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BG

30S RIBOSOMAL PROTEIN S4

Chain BO

30S RIBOSOMAL PROTEIN S12