IL_4V8F_152

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8F_152 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.0836

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

4V8F|1|BA|G|887
4V8F|1|BA|G|888
4V8F|1|BA|A|889
4V8F|1|BA|G|890
4V8F|1|BA|U|891
4V8F|1|BA|A|892
4V8F|1|BA|C|893
4V8F|1|BA|G|894
*
4V8F|1|BA|U|905
4V8F|1|BA|G|906
4V8F|1|BA|A|907
4V8F|1|BA|A|908
4V8F|1|BA|A|909
4V8F|1|BA|C|910

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BO

30S RIBOSOMAL PROTEIN S12

Chain BT

30S RIBOSOMAL PROTEIN S17