IL_4V8F_158

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8F_158 not in the Motif Atlas

Homologous match to IL_4LFB_038

Geometric discrepancy: 0.1553

The information below is about IL_4LFB_038

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

4V8F|1|BA|G|953
4V8F|1|BA|G|954
*
4V8F|1|BA|C|1226
4V8F|1|BA|A|1227
4V8F|1|BA|C|1228

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BB

TRNA-TYR

Chain BC

Transfer RNA; tRNA

Chain BP

30S RIBOSOMAL PROTEIN S13

Chain BV

30S RIBOSOMAL PROTEIN S19