IL_4V8F_159

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GACAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8F_159 not in the Motif Atlas

Homologous match to IL_4LFB_039

Geometric discrepancy: 0.1607

The information below is about IL_4LFB_039

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

4V8F|1|BA|G|993
4V8F|1|BA|A|994
4V8F|1|BA|C|995
4V8F|1|BA|A|996
4V8F|1|BA|U|997
*
4V8F|1|BA|A|1044
4V8F|1|BA|C|1045

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BQ

30S RIBOSOMAL PROTEIN S14

Chain DA

Large subunit ribosomal RNA; LSU rRNA