IL_4V8F_176
3D structure
- PDB id
- 4V8F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GCCC*GUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8F_176 not in the Motif Atlas
- Geometric match to IL_4V88_464
- Geometric discrepancy: 0.1289
- The information below is about IL_4V88_464
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65718.1
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V8F|1|BA|G|1401
4V8F|1|BA|C|1402
4V8F|1|BA|C|1403
4V8F|1|BA|C|1404
*
4V8F|1|BA|G|1497
4V8F|1|BA|U|1498
4V8F|1|BA|A|1499
4V8F|1|BA|A|1500
4V8F|1|BA|C|1501
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain B1
- MRNA
- Chain BC
- Transfer RNA; tRNA
- Chain BO
- 30S RIBOSOMAL PROTEIN S12
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