IL_4V8F_184

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUG*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GUG,CAC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8F_184 not in the Motif Atlas

Geometric match to IL_7A0S_042

Geometric discrepancy: 0.277

The information below is about IL_7A0S_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V8F|1|BB|G|2
4V8F|1|BB|U|3
4V8F|1|BB|G|4
*
4V8F|1|BB|C|78
4V8F|1|BB|A|79
4V8F|1|BB|C|80

Current chains

Chain BB

TRNA-TYR

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain AP

50S ribosomal protein L16

Chain BC

Transfer RNA; tRNA