3D structure

PDB id
4V8F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
GAGUAG*CGCAGAUAC
Length
15 nucleotides
Bulged bases
4V8F|1|CA|A|702
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V8F_222 not in the Motif Atlas
Homologous match to IL_4LFB_031
Geometric discrepancy: 0.0901
The information below is about IL_4LFB_031
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_95727.1
Basepair signature
cWW-L-tSH-L-tHW-tHS-R-cWW-L
Number of instances in this motif group
1

Unit IDs

4V8F|1|CA|G|683
4V8F|1|CA|A|684
4V8F|1|CA|G|685
4V8F|1|CA|U|686
4V8F|1|CA|A|687
4V8F|1|CA|G|688
*
4V8F|1|CA|C|699
4V8F|1|CA|G|700
4V8F|1|CA|C|701
4V8F|1|CA|A|702
4V8F|1|CA|G|703
4V8F|1|CA|A|704
4V8F|1|CA|U|705
4V8F|1|CA|A|706
4V8F|1|CA|C|707

Current chains

Chain CA
16S ribosomal RNA

Nearby chains

Chain CN
30S RIBOSOMAL PROTEIN S11
Chain DA
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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