IL_4V8F_222

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAGUAG*CGCAGAUAC

Length

15 nucleotides

Bulged bases

4V8F|1|CA|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8F_222 not in the Motif Atlas

Homologous match to IL_4LFB_031

Geometric discrepancy: 0.0901

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_95727.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

1

Unit IDs

4V8F|1|CA|G|683
4V8F|1|CA|A|684
4V8F|1|CA|G|685
4V8F|1|CA|U|686
4V8F|1|CA|A|687
4V8F|1|CA|G|688
*
4V8F|1|CA|C|699
4V8F|1|CA|G|700
4V8F|1|CA|C|701
4V8F|1|CA|A|702
4V8F|1|CA|G|703
4V8F|1|CA|A|704
4V8F|1|CA|U|705
4V8F|1|CA|A|706
4V8F|1|CA|C|707

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CN

30S RIBOSOMAL PROTEIN S11

Chain DA

Large subunit ribosomal RNA; LSU rRNA