IL_4V8F_231

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8F_231 not in the Motif Atlas

Geometric match to IL_3ICQ_003

Geometric discrepancy: 0.2805

The information below is about IL_3ICQ_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

4V8F|1|CA|C|1008
4V8F|1|CA|G|1009
4V8F|1|CA|G|1010
*
4V8F|1|CA|C|1019
4V8F|1|CA|U|1020
4V8F|1|CA|G|1021

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CV

30S RIBOSOMAL PROTEIN S19