IL_4V8F_235
3D structure
- PDB id
- 4V8F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GG*UCAGC
- Length
- 7 nucleotides
- Bulged bases
- 4V8F|1|CA|C|1200, 4V8F|1|CA|A|1201
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8F_235 not in the Motif Atlas
- Geometric match to IL_4LFB_045
- Geometric discrepancy: 0.2095
- The information below is about IL_4LFB_045
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_95583.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
4V8F|1|CA|G|1057
4V8F|1|CA|G|1058
*
4V8F|1|CA|U|1199
4V8F|1|CA|C|1200
4V8F|1|CA|A|1201
4V8F|1|CA|G|1202
4V8F|1|CA|C|1203
Current chains
- Chain CA
- 16S ribosomal RNA
Nearby chains
- Chain CB
- TRNA-TYR
- Chain CF
- 30S RIBOSOMAL PROTEIN S3
- Chain CM
- 30S RIBOSOMAL PROTEIN S10
- Chain CQ
- 30S RIBOSOMAL PROTEIN S14
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