IL_4V8F_238
3D structure
- PDB id
- 4V8F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UAG*CUA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary: UAG,CUA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8F_238 not in the Motif Atlas
- Geometric match to IL_6RTI_005
- Geometric discrepancy: 0.3389
- The information below is about IL_6RTI_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_14688.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V8F|1|CA|U|1122
4V8F|1|CA|A|1123
4V8F|1|CA|G|1124
*
4V8F|1|CA|C|1149
4V8F|1|CA|U|1150
4V8F|1|CA|A|1151
Current chains
- Chain CA
- 16S ribosomal RNA
Nearby chains
- Chain CL
- 30S RIBOSOMAL PROTEIN S9
- Chain CM
- 30S RIBOSOMAL PROTEIN S10
Coloring options: