IL_4V8F_247
3D structure
- PDB id
- 4V8F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GUC*GUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8F_247 not in the Motif Atlas
- Geometric match to IL_4ZC7_004
- Geometric discrepancy: 0.1736
- The information below is about IL_4ZC7_004
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
4V8F|1|CA|G|1405
4V8F|1|CA|U|1406
4V8F|1|CA|C|1407
*
4V8F|1|CA|G|1494
4V8F|1|CA|U|1495
4V8F|1|CA|C|1496
Current chains
- Chain CA
- 16S ribosomal RNA
Nearby chains
- Chain C1
- MRNA
- Chain CB
- TRNA-TYR
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: