IL_4V8F_253

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGGGAG*CAG

Length

9 nucleotides

Bulged bases

4V8F|1|CA|G|1443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8F_253 not in the Motif Atlas

Homologous match to IL_4LFB_064

Geometric discrepancy: 0.2644

The information below is about IL_4LFB_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49061.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

6

Unit IDs

4V8F|1|CA|C|1440
4V8F|1|CA|G|1441
4V8F|1|CA|G|1442
4V8F|1|CA|G|1443
4V8F|1|CA|A|1446
4V8F|1|CA|G|1447
*
4V8F|1|CA|C|1459
4V8F|1|CA|A|1460
4V8F|1|CA|G|1461

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CW

30S RIBOSOMAL PROTEIN S20

Chain DA

Large subunit ribosomal RNA; LSU rRNA

Chain DR

50S ribosomal protein L19