IL_4V8F_254

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUG*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GUG,CAC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8F_254 not in the Motif Atlas

Geometric match to IL_4M4O_001

Geometric discrepancy: 0.3238

The information below is about IL_4M4O_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V8F|1|CB|G|2
4V8F|1|CB|U|3
4V8F|1|CB|G|4
*
4V8F|1|CB|C|78
4V8F|1|CB|A|79
4V8F|1|CB|C|80

Current chains

Chain CB

TRNA-TYR

Nearby chains

Chain CC

Transfer RNA; tRNA

Chain DA

Large subunit ribosomal RNA; LSU rRNA

Chain DP

50S ribosomal protein L16