IL_4V8F_255
3D structure
- PDB id
- 4V8F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GAAGG*CCUUC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary: GAAGG,CCUUC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8F_255 not in the Motif Atlas
- Geometric match to IL_5TBW_121
- Geometric discrepancy: 0.3067
- The information below is about IL_5TBW_121
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_05145.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 13
Unit IDs
4V8F|1|CD|G|58
4V8F|1|CD|A|59
4V8F|1|CD|A|60
4V8F|1|CD|G|61
4V8F|1|CD|G|62
*
4V8F|1|CD|C|70
4V8F|1|CD|C|71
4V8F|1|CD|U|72
4V8F|1|CD|U|73
4V8F|1|CD|C|74
Current chains
- Chain CD
- TRNA-TYR
Nearby chains
No other chains within 10ÅColoring options: