IL_4V8F_284

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCC*GAGU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8F_284 not in the Motif Atlas

Geometric match to IL_4N0T_004

Geometric discrepancy: 0.3912

The information below is about IL_4N0T_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_99358.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

4V8F|1|DA|G|836
4V8F|1|DA|C|837
4V8F|1|DA|C|838
*
4V8F|1|DA|G|940
4V8F|1|DA|A|941
4V8F|1|DA|G|942
4V8F|1|DA|U|943

Current chains

Chain DA

RNA (2912-MER)

Nearby chains

Chain D8

50S ribosomal protein L35

Chain DO

50S ribosomal protein L15