IL_4V8F_289
3D structure
- PDB id
- 4V8F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GA*UCC
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8F_289 not in the Motif Atlas
- Geometric match to IL_4V9F_034
- Geometric discrepancy: 0.1812
- The information below is about IL_4V9F_034
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_51454.3
- Basepair signature
- cWW-cSH-cWW
- Number of instances in this motif group
- 45
Unit IDs
4V8F|1|DA|G|862
4V8F|1|DA|A|863
*
4V8F|1|DA|U|913
4V8F|1|DA|C|914
4V8F|1|DA|C|915
Current chains
- Chain DA
- RNA (2912-MER)
Nearby chains
- Chain DB
- 5S ribosomal RNA; 5S rRNA
- Chain DP
- 50S ribosomal protein L16
- Chain DV
- 50S ribosomal protein L25
Coloring options: