3D structure

PDB id
4V8F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
GA*UCC
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V8F_289 not in the Motif Atlas
Geometric match to IL_4V9F_034
Geometric discrepancy: 0.1812
The information below is about IL_4V9F_034
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_51454.3
Basepair signature
cWW-cSH-cWW
Number of instances in this motif group
45

Unit IDs

4V8F|1|DA|G|862
4V8F|1|DA|A|863
*
4V8F|1|DA|U|913
4V8F|1|DA|C|914
4V8F|1|DA|C|915

Current chains

Chain DA
RNA (2912-MER)

Nearby chains

Chain DB
5S ribosomal RNA; 5S rRNA
Chain DP
50S ribosomal protein L16
Chain DV
50S ribosomal protein L25

Coloring options:


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