IL_4V8F_299
3D structure
- PDB id
- 4V8F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GGUAAAG*CGAAAAUGAUCGGGGC
- Length
- 23 nucleotides
- Bulged bases
- 4V8F|1|DA|U|1026, 4V8F|1|DA|A|1127, 4V8F|1|DA|U|1130
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8F_299 not in the Motif Atlas
- Geometric match to IL_7RQB_040
- Geometric discrepancy: 0.0899
- The information below is about IL_7RQB_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
4V8F|1|DA|G|1024
4V8F|1|DA|G|1025
4V8F|1|DA|U|1026
4V8F|1|DA|A|1027
4V8F|1|DA|A|1028
4V8F|1|DA|A|1029
4V8F|1|DA|G|1030
*
4V8F|1|DA|C|1124
4V8F|1|DA|G|1125
4V8F|1|DA|A|1126
4V8F|1|DA|A|1127
4V8F|1|DA|A|1128
4V8F|1|DA|A|1129
4V8F|1|DA|U|1130
4V8F|1|DA|G|1131
4V8F|1|DA|A|1132
4V8F|1|DA|U|1133
4V8F|1|DA|C|1135
4V8F|1|DA|G|1136
4V8F|1|DA|G|1137
4V8F|1|DA|G|1138
4V8F|1|DA|G|1139
4V8F|1|DA|C|1140
Current chains
- Chain DA
- RNA (2912-MER)
Nearby chains
- Chain DB
- 5S ribosomal RNA; 5S rRNA
- Chain DE
- 50S ribosomal protein L3
- Chain DM
- 50S ribosomal protein L13
- Chain DP
- 50S ribosomal protein L16
Coloring options: