IL_4V8F_303

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

4V8F|1|DA|A|1088, 4V8F|1|DA|G|1089

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8F_303 not in the Motif Atlas

Geometric match to IL_5B2P_002

Geometric discrepancy: 0.3428

The information below is about IL_5B2P_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4V8F|1|DA|G|1087
4V8F|1|DA|A|1088
4V8F|1|DA|G|1089
4V8F|1|DA|U|1090
4V8F|1|DA|G|1091
*
4V8F|1|DA|C|1100
4V8F|1|DA|U|1101
4V8F|1|DA|C|1102

Current chains

Chain DA

RNA (2912-MER)

Nearby chains