IL_4V8F_328

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

ACUCUG*CUGU

Length

10 nucleotides

Bulged bases

4V8F|1|DA|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8F_328 not in the Motif Atlas

Geometric match to IL_7RQB_067

Geometric discrepancy: 0.1119

The information below is about IL_7RQB_067

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76273.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

14

Unit IDs

4V8F|1|DA|A|1669
4V8F|1|DA|C|1670
4V8F|1|DA|U|1671
4V8F|1|DA|C|1672
4V8F|1|DA|U|1673
4V8F|1|DA|G|1674
*
4V8F|1|DA|C|1990
4V8F|1|DA|U|1991
4V8F|1|DA|G|1992
4V8F|1|DA|U|1993

Current chains

Chain DA

RNA (2912-MER)

Nearby chains

Chain DE

50S ribosomal protein L3

Chain DN

50S ribosomal protein L14