3D structure

PDB id
4V8F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
CCUCU*AUG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V8F_364 not in the Motif Atlas
Homologous match to IL_7RQB_104
Geometric discrepancy: 0.1406
The information below is about IL_7RQB_104
Detailed Annotation
C-loop
Broad Annotation
No text annotation
Motif group
IL_63596.6
Basepair signature
cWW-cWS-cSH-tWH-cWW-L
Number of instances in this motif group
14

Unit IDs

4V8F|1|DA|C|2680
4V8F|1|DA|C|2681
4V8F|1|DA|U|2682
4V8F|1|DA|C|2683
4V8F|1|DA|U|2684
*
4V8F|1|DA|A|2725
4V8F|1|DA|U|2726
4V8F|1|DA|G|2727

Current chains

Chain DA
RNA (2912-MER)

Nearby chains

Chain D0
50S ribosomal protein L17
Chain DE
50S ribosomal protein L3
Chain DN
50S ribosomal protein L14
Chain DR
50S ribosomal protein L19

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3378 s