IL_4V8F_370
3D structure
- PDB id
- 4V8F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UGUAAG*UUGAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8F_370 not in the Motif Atlas
- Homologous match to IL_7RQB_110
- Geometric discrepancy: 0.095
- The information below is about IL_7RQB_110
- Detailed Annotation
- tHS double platform
- Broad Annotation
- No text annotation
- Motif group
- IL_83162.5
- Basepair signature
- cWW-tSH-L-tHH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V8F|1|DA|U|2847
4V8F|1|DA|G|2848
4V8F|1|DA|U|2849
4V8F|1|DA|A|2850
4V8F|1|DA|A|2851
4V8F|1|DA|G|2852
*
4V8F|1|DA|U|2865
4V8F|1|DA|U|2866
4V8F|1|DA|G|2867
4V8F|1|DA|A|2868
4V8F|1|DA|G|2869
Current chains
- Chain DA
- RNA (2912-MER)
Nearby chains
- Chain D0
- 50S ribosomal protein L17
- Chain DR
- 50S ribosomal protein L19
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