3D structure

PDB id
4V8F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
UGUAAG*UUGAG
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V8F_370 not in the Motif Atlas
Homologous match to IL_7RQB_110
Geometric discrepancy: 0.095
The information below is about IL_7RQB_110
Detailed Annotation
tHS double platform
Broad Annotation
No text annotation
Motif group
IL_83162.5
Basepair signature
cWW-tSH-L-tHH-L-cWW
Number of instances in this motif group
7

Unit IDs

4V8F|1|DA|U|2847
4V8F|1|DA|G|2848
4V8F|1|DA|U|2849
4V8F|1|DA|A|2850
4V8F|1|DA|A|2851
4V8F|1|DA|G|2852
*
4V8F|1|DA|U|2865
4V8F|1|DA|U|2866
4V8F|1|DA|G|2867
4V8F|1|DA|A|2868
4V8F|1|DA|G|2869

Current chains

Chain DA
RNA (2912-MER)

Nearby chains

Chain D0
50S ribosomal protein L17
Chain DR
50S ribosomal protein L19

Coloring options:


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