IL_4V8F_396

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

4V8F|1|AA|U|1061, 4V8F|1|AA|U|1078

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8F_396 not in the Motif Atlas

Homologous match to IL_5J7L_285

Geometric discrepancy: 0.5936

The information below is about IL_5J7L_285

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92446.2

Basepair signature

cWW-cWW-R-L-L

Number of instances in this motif group

5

Unit IDs

4V8F|1|AA|G|1059
4V8F|1|AA|U|1060
4V8F|1|AA|U|1061
4V8F|1|AA|G|1062
*
4V8F|1|AA|C|1076
4V8F|1|AA|A|1077
4V8F|1|AA|U|1078
4V8F|1|AA|C|1079

Current chains

Chain AA

RNA (2912-MER)

Nearby chains