IL_4V8G_230

3D structure

PDB id

4V8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of RMF bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCAGC*GG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8G_230 not in the Motif Atlas

Geometric match to IL_3MXH_005

Geometric discrepancy: 0.3661

The information below is about IL_3MXH_005

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_15052.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

8

Unit IDs

4V8G|1|CA|C|1128
4V8G|1|CA|C|1129
4V8G|1|CA|A|1130
4V8G|1|CA|G|1131
4V8G|1|CA|C|1132
*
4V8G|1|CA|G|1142
4V8G|1|CA|G|1143

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CI

30S Ribosomal Protein S9