IL_4V8G_239

3D structure

PDB id

4V8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of RMF bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

4V8G|1|CA|A|1492

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8G_239 not in the Motif Atlas

Geometric match to IL_3TD0_002

Geometric discrepancy: 0.3585

The information below is about IL_3TD0_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

4V8G|1|CA|C|1407
4V8G|1|CA|A|1408
4V8G|1|CA|C|1409
*
4V8G|1|CA|G|1491
4V8G|1|CA|A|1492
4V8G|1|CA|A|1493
4V8G|1|CA|G|1494

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CL

30S Ribosomal Protein S12

Chain DA

Large subunit ribosomal RNA; LSU rRNA