IL_4V8G_263

3D structure

PDB id

4V8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of RMF bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

4V8G|1|DA|G|801, 4V8G|1|DA|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8G_263 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.0387

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

4V8G|1|DA|G|674
4V8G|1|DA|A|675
4V8G|1|DA|A|676
4V8G|1|DA|A|677
4V8G|1|DA|C|678
*
4V8G|1|DA|G|799
4V8G|1|DA|A|800
4V8G|1|DA|G|801
4V8G|1|DA|A|802
4V8G|1|DA|U|803
4V8G|1|DA|A|804
4V8G|1|DA|G|805
4V8G|1|DA|C|806

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DF

50S Ribosomal Protein L4

Chain DP

50S Ribosomal Protein L15