IL_4V8G_371

3D structure

PDB id

4V8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of RMF bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UCAAGG*CCGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8G_371 not in the Motif Atlas

Geometric match to IL_4V9F_057

Geometric discrepancy: 0.341

The information below is about IL_4V9F_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34822.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

4V8G|1|BA|U|1851
4V8G|1|BA|C|1852
4V8G|1|BA|A|1853
4V8G|1|BA|A|1854
4V8G|1|BA|G|1855
4V8G|1|BA|G|1856
*
4V8G|1|BA|C|1886
4V8G|1|BA|C|1887
4V8G|1|BA|G|1888
4V8G|1|BA|A|1889
4V8G|1|BA|A|1890
4V8G|1|BA|G|1891

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains