IL_4V8H_044

3D structure

PDB id

4V8H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of HPF bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGU*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8H_044 not in the Motif Atlas

Geometric match to IL_1U6B_005

Geometric discrepancy: 0.2942

The information below is about IL_1U6B_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

4V8H|1|AA|G|1010
4V8H|1|AA|G|1011
4V8H|1|AA|U|1012
*
4V8H|1|AA|G|1017
4V8H|1|AA|C|1018
4V8H|1|AA|C|1019

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains