IL_4V8H_048

3D structure

PDB id

4V8H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of HPF bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCC*GGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8H_048 not in the Motif Atlas

Geometric match to IL_2ZNI_001

Geometric discrepancy: 0.2145

The information below is about IL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

4V8H|1|AA|G|1058
4V8H|1|AA|C|1059
4V8H|1|AA|C|1060
*
4V8H|1|AA|G|1197
4V8H|1|AA|G|1198
4V8H|1|AA|U|1199

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AC

30S Ribosomal Protein S3

Chain AJ

30S Ribosomal Protein S10

Chain AN

30S Ribosomal Protein S14