3D structure

PDB id
4V8H (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of HPF bound to the 70S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GCCC*GUAAC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V8H_059 not in the Motif Atlas
Geometric match to IL_4V88_464
Geometric discrepancy: 0.1101
The information below is about IL_4V88_464
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_65718.1
Basepair signature
cWW-cSH-cWS-cWW-cWW
Number of instances in this motif group
5

Unit IDs

4V8H|1|AA|G|1401
4V8H|1|AA|C|1402
4V8H|1|AA|C|1403
4V8H|1|AA|C|1404
*
4V8H|1|AA|G|1497
4V8H|1|AA|U|1498
4V8H|1|AA|A|1499
4V8H|1|AA|A|1500
4V8H|1|AA|C|1501

Current chains

Chain AA
16S Ribosomal RNA

Nearby chains

Chain AX
Probable sigma(54) modulation protein
Chain BA
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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